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Regional-Scale In-Depth Analysis of Soil Fungal Diversity Reveals Strong pH and Plant Species Effects in Northern Europe.

Identifieur interne : 000152 ( Main/Exploration ); précédent : 000151; suivant : 000153

Regional-Scale In-Depth Analysis of Soil Fungal Diversity Reveals Strong pH and Plant Species Effects in Northern Europe.

Auteurs : Leho Tedersoo [Estonie] ; Sten Anslan [Estonie, Allemagne] ; Mohammad Bahram [Estonie, Suède] ; Rein Drenkhan [Estonie] ; Karin Pritsch [Allemagne] ; Franz Buegger [Allemagne] ; Allar Padari [Estonie] ; Niloufar Hagh-Doust [Estonie] ; Vladimir Mikryukov [Russie] ; Daniyal Gohar [Estonie] ; Rasekh Amiri [Estonie] ; Indrek Hiiesalu [Estonie] ; Reimo Lutter [Estonie] ; Raul Rosenvald [Estonie] ; Elisabeth R Hn [Estonie] ; Kalev Adamson [Estonie] ; Tiia Drenkhan [Estonie, Finlande] ; Hardi Tullus [Estonie] ; Katrin Jürimaa [Estonie] ; Ivar Sibul [Estonie] ; Eveli Otsing [Estonie] ; Sergei P Lme [Estonie] ; Marek Metslaid [Estonie] ; Kaire Loit [Estonie] ; Ahto Agan [Estonie] ; Rasmus Puusepp [Estonie] ; Inge Varik [Estonie] ; Urmas K Ljalg [Estonie] ; Kessy Abarenkov [Estonie]

Source :

RBID : pubmed:33013735

Abstract

Soil microbiome has a pivotal role in ecosystem functioning, yet little is known about its build-up from local to regional scales. In a multi-year regional-scale survey involving 1251 plots and long-read third-generation sequencing, we found that soil pH has the strongest effect on the diversity of fungi and its multiple taxonomic and functional groups. The pH effects were typically unimodal, usually both direct and indirect through tree species, soil nutrients or mold abundance. Individual tree species, particularly Pinus sylvestris, Picea abies, and Populus x wettsteinii, and overall ectomycorrhizal plant proportion had relatively stronger effects on the diversity of biotrophic fungi than saprotrophic fungi. We found strong temporal sampling and investigator biases for the abundance of molds, but generally all spatial, temporal and microclimatic effects were weak. Richness of fungi and several functional groups was highest in woodlands and around ruins of buildings but lowest in bogs, with marked group-specific trends. In contrast to our expectations, diversity of soil fungi tended to be higher in forest island habitats potentially due to the edge effect, but fungal richness declined with island distance and in response to forest fragmentation. Virgin forests supported somewhat higher fungal diversity than old non-pristine forests, but there were no differences in richness between natural and anthropogenic habitats such as parks and coppiced gardens. Diversity of most fungal groups suffered from management of seminatural woodlands and parks and thinning of forests, but especially for forests the results depended on fungal group and time since partial harvesting. We conclude that the positive effects of tree diversity on overall fungal richness represent a combined niche effect of soil properties and intimate associations.

DOI: 10.3389/fmicb.2020.01953
PubMed: 33013735
PubMed Central: PMC7510051


Affiliations:


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<name sortKey="Lutter, Reimo" sort="Lutter, Reimo" uniqKey="Lutter R" first="Reimo" last="Lutter">Reimo Lutter</name>
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<name sortKey="R Hn, Elisabeth" sort="R Hn, Elisabeth" uniqKey="R Hn E" first="Elisabeth" last="R Hn">Elisabeth R Hn</name>
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<name sortKey="Adamson, Kalev" sort="Adamson, Kalev" uniqKey="Adamson K" first="Kalev" last="Adamson">Kalev Adamson</name>
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<wicri:noRegion>Tartu</wicri:noRegion>
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<nlm:affiliation>Forest Health and Biodiversity, Natural Resources Institute Finland (Luke), Helsinki, Finland.</nlm:affiliation>
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<name sortKey="Tullus, Hardi" sort="Tullus, Hardi" uniqKey="Tullus H" first="Hardi" last="Tullus">Hardi Tullus</name>
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<author>
<name sortKey="Jurimaa, Katrin" sort="Jurimaa, Katrin" uniqKey="Jurimaa K" first="Katrin" last="Jürimaa">Katrin Jürimaa</name>
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<author>
<name sortKey="Sibul, Ivar" sort="Sibul, Ivar" uniqKey="Sibul I" first="Ivar" last="Sibul">Ivar Sibul</name>
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<wicri:noRegion>Tartu</wicri:noRegion>
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<author>
<name sortKey="Otsing, Eveli" sort="Otsing, Eveli" uniqKey="Otsing E" first="Eveli" last="Otsing">Eveli Otsing</name>
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</affiliation>
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<name sortKey="Metslaid, Marek" sort="Metslaid, Marek" uniqKey="Metslaid M" first="Marek" last="Metslaid">Marek Metslaid</name>
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<name sortKey="Loit, Kaire" sort="Loit, Kaire" uniqKey="Loit K" first="Kaire" last="Loit">Kaire Loit</name>
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<wicri:regionArea>Chair of Plant Health, Estonian University of Life Sciences, Tartu</wicri:regionArea>
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<name sortKey="Agan, Ahto" sort="Agan, Ahto" uniqKey="Agan A" first="Ahto" last="Agan">Ahto Agan</name>
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<name sortKey="Puusepp, Rasmus" sort="Puusepp, Rasmus" uniqKey="Puusepp R" first="Rasmus" last="Puusepp">Rasmus Puusepp</name>
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<author>
<name sortKey="Abarenkov, Kessy" sort="Abarenkov, Kessy" uniqKey="Abarenkov K" first="Kessy" last="Abarenkov">Kessy Abarenkov</name>
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<series>
<title level="j">Frontiers in microbiology</title>
<idno type="ISSN">1664-302X</idno>
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<date when="2020" type="published">2020</date>
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<div type="abstract" xml:lang="en">Soil microbiome has a pivotal role in ecosystem functioning, yet little is known about its build-up from local to regional scales. In a multi-year regional-scale survey involving 1251 plots and long-read third-generation sequencing, we found that soil pH has the strongest effect on the diversity of fungi and its multiple taxonomic and functional groups. The pH effects were typically unimodal, usually both direct and indirect through tree species, soil nutrients or mold abundance. Individual tree species, particularly
<i>Pinus sylvestris</i>
,
<i>Picea abies</i>
, and
<i>Populus x wettsteinii</i>
, and overall ectomycorrhizal plant proportion had relatively stronger effects on the diversity of biotrophic fungi than saprotrophic fungi. We found strong temporal sampling and investigator biases for the abundance of molds, but generally all spatial, temporal and microclimatic effects were weak. Richness of fungi and several functional groups was highest in woodlands and around ruins of buildings but lowest in bogs, with marked group-specific trends. In contrast to our expectations, diversity of soil fungi tended to be higher in forest island habitats potentially due to the edge effect, but fungal richness declined with island distance and in response to forest fragmentation. Virgin forests supported somewhat higher fungal diversity than old non-pristine forests, but there were no differences in richness between natural and anthropogenic habitats such as parks and coppiced gardens. Diversity of most fungal groups suffered from management of seminatural woodlands and parks and thinning of forests, but especially for forests the results depended on fungal group and time since partial harvesting. We conclude that the positive effects of tree diversity on overall fungal richness represent a combined niche effect of soil properties and intimate associations.</div>
</front>
</TEI>
<pubmed>
<MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM">
<PMID Version="1">33013735</PMID>
<DateRevised>
<Year>2020</Year>
<Month>10</Month>
<Day>06</Day>
</DateRevised>
<Article PubModel="Electronic-eCollection">
<Journal>
<ISSN IssnType="Print">1664-302X</ISSN>
<JournalIssue CitedMedium="Print">
<Volume>11</Volume>
<PubDate>
<Year>2020</Year>
</PubDate>
</JournalIssue>
<Title>Frontiers in microbiology</Title>
<ISOAbbreviation>Front Microbiol</ISOAbbreviation>
</Journal>
<ArticleTitle>Regional-Scale In-Depth Analysis of Soil Fungal Diversity Reveals Strong pH and Plant Species Effects in Northern Europe.</ArticleTitle>
<Pagination>
<MedlinePgn>1953</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.3389/fmicb.2020.01953</ELocationID>
<Abstract>
<AbstractText>Soil microbiome has a pivotal role in ecosystem functioning, yet little is known about its build-up from local to regional scales. In a multi-year regional-scale survey involving 1251 plots and long-read third-generation sequencing, we found that soil pH has the strongest effect on the diversity of fungi and its multiple taxonomic and functional groups. The pH effects were typically unimodal, usually both direct and indirect through tree species, soil nutrients or mold abundance. Individual tree species, particularly
<i>Pinus sylvestris</i>
,
<i>Picea abies</i>
, and
<i>Populus x wettsteinii</i>
, and overall ectomycorrhizal plant proportion had relatively stronger effects on the diversity of biotrophic fungi than saprotrophic fungi. We found strong temporal sampling and investigator biases for the abundance of molds, but generally all spatial, temporal and microclimatic effects were weak. Richness of fungi and several functional groups was highest in woodlands and around ruins of buildings but lowest in bogs, with marked group-specific trends. In contrast to our expectations, diversity of soil fungi tended to be higher in forest island habitats potentially due to the edge effect, but fungal richness declined with island distance and in response to forest fragmentation. Virgin forests supported somewhat higher fungal diversity than old non-pristine forests, but there were no differences in richness between natural and anthropogenic habitats such as parks and coppiced gardens. Diversity of most fungal groups suffered from management of seminatural woodlands and parks and thinning of forests, but especially for forests the results depended on fungal group and time since partial harvesting. We conclude that the positive effects of tree diversity on overall fungal richness represent a combined niche effect of soil properties and intimate associations.</AbstractText>
<CopyrightInformation>Copyright © 2020 Tedersoo, Anslan, Bahram, Drenkhan, Pritsch, Buegger, Padari, Hagh-Doust, Mikryukov, Gohar, Amiri, Hiiesalu, Lutter, Rosenvald, Rähn, Adamson, Drenkhan, Tullus, Jürimaa, Sibul, Otsing, Põlme, Metslaid, Loit, Agan, Puusepp, Varik, Kõljalg and Abarenkov.</CopyrightInformation>
</Abstract>
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<LastName>Tedersoo</LastName>
<ForeName>Leho</ForeName>
<Initials>L</Initials>
<AffiliationInfo>
<Affiliation>Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Anslan</LastName>
<ForeName>Sten</ForeName>
<Initials>S</Initials>
<AffiliationInfo>
<Affiliation>Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Zoological Institute, Technische Universität Braunschweig, Brunswick, Germany.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Bahram</LastName>
<ForeName>Mohammad</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden.</Affiliation>
</AffiliationInfo>
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</AffiliationInfo>
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</AffiliationInfo>
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</AffiliationInfo>
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</AffiliationInfo>
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<LastName>Mikryukov</LastName>
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<name sortKey="P Lme, Sergei" sort="P Lme, Sergei" uniqKey="P Lme S" first="Sergei" last="P Lme">Sergei P Lme</name>
<name sortKey="Padari, Allar" sort="Padari, Allar" uniqKey="Padari A" first="Allar" last="Padari">Allar Padari</name>
<name sortKey="Puusepp, Rasmus" sort="Puusepp, Rasmus" uniqKey="Puusepp R" first="Rasmus" last="Puusepp">Rasmus Puusepp</name>
<name sortKey="R Hn, Elisabeth" sort="R Hn, Elisabeth" uniqKey="R Hn E" first="Elisabeth" last="R Hn">Elisabeth R Hn</name>
<name sortKey="Rosenvald, Raul" sort="Rosenvald, Raul" uniqKey="Rosenvald R" first="Raul" last="Rosenvald">Raul Rosenvald</name>
<name sortKey="Sibul, Ivar" sort="Sibul, Ivar" uniqKey="Sibul I" first="Ivar" last="Sibul">Ivar Sibul</name>
<name sortKey="Tullus, Hardi" sort="Tullus, Hardi" uniqKey="Tullus H" first="Hardi" last="Tullus">Hardi Tullus</name>
<name sortKey="Varik, Inge" sort="Varik, Inge" uniqKey="Varik I" first="Inge" last="Varik">Inge Varik</name>
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<country name="Allemagne">
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<name sortKey="Anslan, Sten" sort="Anslan, Sten" uniqKey="Anslan S" first="Sten" last="Anslan">Sten Anslan</name>
</noRegion>
<name sortKey="Buegger, Franz" sort="Buegger, Franz" uniqKey="Buegger F" first="Franz" last="Buegger">Franz Buegger</name>
<name sortKey="Pritsch, Karin" sort="Pritsch, Karin" uniqKey="Pritsch K" first="Karin" last="Pritsch">Karin Pritsch</name>
</country>
<country name="Suède">
<noRegion>
<name sortKey="Bahram, Mohammad" sort="Bahram, Mohammad" uniqKey="Bahram M" first="Mohammad" last="Bahram">Mohammad Bahram</name>
</noRegion>
</country>
<country name="Russie">
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<name sortKey="Mikryukov, Vladimir" sort="Mikryukov, Vladimir" uniqKey="Mikryukov V" first="Vladimir" last="Mikryukov">Vladimir Mikryukov</name>
</noRegion>
</country>
<country name="Finlande">
<noRegion>
<name sortKey="Drenkhan, Tiia" sort="Drenkhan, Tiia" uniqKey="Drenkhan T" first="Tiia" last="Drenkhan">Tiia Drenkhan</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>

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   |texte=   Regional-Scale In-Depth Analysis of Soil Fungal Diversity Reveals Strong pH and Plant Species Effects in Northern Europe.
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